Journal: Journal of Animal Science and Technology

Article Title: Single nucleotide polymorphism marker combinations for classifying Yeonsan Ogye chicken using a machine learning approach

doi: 10.5187/jast.2022.e64

Figure Lengend Snippet: Summary of the samples used in this study

Article Snippet: In this study, the optimal combinations of single nucleotide polymorphism (SNP) markers for discriminating the Yeonsan Ogye chicken ( Gallus gallus domesticus ) breed were identified using high-density 600K SNP array data.

Techniques: Selection

Journal: Frontiers in Plant Science

Article Title: High Resolution Mapping of Rph MBR 1012 Conferring Resistance to Puccinia hordei in Barley ( Hordeum vulgare L.)

doi: 10.3389/fpls.2019.00640

Figure Lengend Snippet: High-resolution genetic map of Rph MBR 1012 . (A) The genomic region harboring the Rph MBR1012. (B) The identification of 537 recombinants and mapping of Rph MBR 1012 locus based on markers derived from the Genome Zipper and the 9K iSelect chip flanked by QBS97 and QBS98. The blue boxes indicate the physical size. (C) Target region used for marker saturation based on the 50K Infinium chip and GBS markers. Markers derived from the 50K Infinium chip are highlighted with orange and markers derived from GBS are shown in green. Co-segregating markers are indicated by italics. (D) Genetic map of Rph MBR 1012 locus.

Article Snippet: Subsequently, the newly developed high-density barley 50K Infinium SNP markers ( ) and GBS markers, which were selected using the reference sequence in the shortened candidate interval (0.1 cM), resulted in the identification of nineteen additional polymorphic SNPs.

Techniques: Derivative Assay, Marker

Journal: Frontiers in Plant Science

Article Title: High Resolution Mapping of Rph MBR 1012 Conferring Resistance to Puccinia hordei in Barley ( Hordeum vulgare L.)

doi: 10.3389/fpls.2019.00640

Figure Lengend Snippet: Landscape of the 50K and GBS marker distribution. Track A: gives the seven barley chromosomes. Track B: grey color depicts GBS: (all, 48.226), blue, position of 37,287 polymorphic SNPs between MBR1012 and Scarlett. Track C: distribution of SNP Chip (50K) markers: grey (all, 40,777), green, position of 14,616 polymorphic SNPs between MBR1012 and Scarlett.

Article Snippet: Subsequently, the newly developed high-density barley 50K Infinium SNP markers ( ) and GBS markers, which were selected using the reference sequence in the shortened candidate interval (0.1 cM), resulted in the identification of nineteen additional polymorphic SNPs.

Techniques: Marker

Journal: Rice

Article Title: QTL Mapping of a Novel Genomic Region Associated with High Out-Crossing Rate Derived from Oryza longistaminata and Development of New CMS Lines in Rice, O. sativa L.

doi: 10.1186/s12284-021-00521-9

Figure Lengend Snippet: Graphical genotype map of the improved maintainer lines a 91B-42 and b 107B-12 and the improved CMS lines c 91A-18 and d 107A-35. This map was constructed based on the genotypic data of the high-density polymorphic SNP markers (Infinium 7 K SNP chip). Numbers below each chromosome indicate the respective chromosome number. Blue, red, and green lines indicate the recurrent parent, donor parent, and heterozygous SNP alleles, respectively. The qSTGL8.0 segment introgression is highlighted by a green circle

Article Snippet: This map was constructed based on the genotypic data of the high-density polymorphic SNP markers (Infinium 7 K SNP chip).

Techniques: Construct